Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1126Transcriptional regulator. (482 aa)    
Predicted Functional Partners:
BCHO_1128
Organic solvents resistance ABC transporter permease.
 
     0.729
BCHO_1690
Transcriptional regulator.
 
   
0.715
BCHO_1127
Membrane spanning protein.
       0.693
BCHO_0437
Membrane protein.
  
   
 0.533
BCHO_1216
Lipid A biosynthesis lauroyl acyltransferase.
  
     0.509
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
     0.454
BCHO_0641
Etk-like tyrosine kinase.
  
  
 0.446
BCHO_0121
Forkhead-associated protein.
  
     0.406
BCHO_0553
Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase.
 
  
 0.402
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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