Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1127Membrane spanning protein. (1032 aa)    
Predicted Functional Partners:
BCHO_1128
Organic solvents resistance ABC transporter permease.
 
     0.964
BCHO_1347
DNA-binding protein.
 
 
 
 0.779
BCHO_0346
UDP-N-acetylmuramyl-tripeptide synthetase.
  
     0.768
BCHO_0374
ATPase.
  
     0.768
BCHO_0940
Membrane protein.
 
     0.768
BCHO_0968
Cell division protein.
  
     0.768
BCHO_0986
Superfamily I DNA and RNA helicase.
  
     0.767
BCHO_1631
Aminoglycoside phosphotransferase.
  
     0.767
BCHO_0631
GTPase regulator-like protein.
  
     0.766
BCHO_0730
Putative ATP-dependent DNA helicase.
 
     0.766
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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