STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1152ABC transporter permease. (434 aa)    
Predicted Functional Partners:
BCHO_0940
Membrane protein.
  
     0.767
BCHO_0985
Tfp pilus assembly protein.
  
     0.750
BCHO_0346
UDP-N-acetylmuramyl-tripeptide synthetase.
  
     0.741
BCHO_0275
Phosphohydrolase.
  
     0.738
BCHO_0374
ATPase.
  
     0.737
BCHO_0811
Membrane protein.
 
     0.712
BCHO_1631
Aminoglycoside phosphotransferase.
 
    0.707
BCHO_0730
Putative ATP-dependent DNA helicase.
  
     0.704
BCHO_1127
Membrane spanning protein.
  
     0.694
BCHO_1407
Tetratricopeptide repeats containing protein.
  
     0.685
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.