BCHO_1169 protein (Bifidobacterium choerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BCHO_1169

ABC transporter ATP-binding protein. (241 aa)

Predicted Functional Partners:

BCHO_1170

0.929

BCHO_1168

0.804

BCHO_0812

0.723

BCHO_0166

0.675

BCHO_1402

0.638

BCHO_1579

0.520

BCHO_1315

0.487

atpD

0.472

atpA

0.463

rlmN

0.462

Your Current Organism:

Bifidobacterium choerinum

NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCHO_0166	BCHO_1169	BCHO_0166	BCHO_1169	Branched-chain amino acid ABC transporter ATPase.	ABC transporter ATP-binding protein.	0.675
BCHO_0812	BCHO_1169	BCHO_0812	BCHO_1169	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.723
BCHO_0812	BCHO_1315	BCHO_0812	BCHO_1315	ABC transporter ATP-binding protein.	Cobalt ABC transporter ATPase.	0.502
BCHO_0812	BCHO_1402	BCHO_0812	BCHO_1402	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.767
BCHO_1168	BCHO_1169	BCHO_1168	BCHO_1169	TetR family transcriptional regulator.	ABC transporter ATP-binding protein.	0.804
BCHO_1168	BCHO_1170	BCHO_1168	BCHO_1170	TetR family transcriptional regulator.	ABC transporter permease.	0.804
BCHO_1168	rlmN	BCHO_1168	BCHO_1167	TetR family transcriptional regulator.	Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.	0.477
BCHO_1169	BCHO_0166	BCHO_1169	BCHO_0166	ABC transporter ATP-binding protein.	Branched-chain amino acid ABC transporter ATPase.	0.675
BCHO_1169	BCHO_0812	BCHO_1169	BCHO_0812	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.723
BCHO_1169	BCHO_1168	BCHO_1169	BCHO_1168	ABC transporter ATP-binding protein.	TetR family transcriptional regulator.	0.804
BCHO_1169	BCHO_1170	BCHO_1169	BCHO_1170	ABC transporter ATP-binding protein.	ABC transporter permease.	0.929
BCHO_1169	BCHO_1315	BCHO_1169	BCHO_1315	ABC transporter ATP-binding protein.	Cobalt ABC transporter ATPase.	0.487
BCHO_1169	BCHO_1402	BCHO_1169	BCHO_1402	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.638
BCHO_1169	BCHO_1579	BCHO_1169	BCHO_1579	ABC transporter ATP-binding protein.	Putative ABC transporter ATP-binding protein.	0.520
BCHO_1169	atpA	BCHO_1169	BCHO_0625	ABC transporter ATP-binding protein.	F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.463
BCHO_1169	atpD	BCHO_1169	BCHO_0627	ABC transporter ATP-binding protein.	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.472
BCHO_1169	rlmN	BCHO_1169	BCHO_1167	ABC transporter ATP-binding protein.	Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.	0.462
BCHO_1170	BCHO_1168	BCHO_1170	BCHO_1168	ABC transporter permease.	TetR family transcriptional regulator.	0.804
BCHO_1170	BCHO_1169	BCHO_1170	BCHO_1169	ABC transporter permease.	ABC transporter ATP-binding protein.	0.929
BCHO_1170	rlmN	BCHO_1170	BCHO_1167	ABC transporter permease.	Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.	0.462