STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1285Xylan esterase. (273 aa)    
Predicted Functional Partners:
BCHO_0155
NAD-dependent epimerase/dehydratase.
  
 
 0.730
BCHO_0181
Sialic acid-specific 9-O-acetylesterase.
 
  
 0.680
BCHO_1284
TetR family transcriptional regulator.
  
  
 0.675
BCHO_1279
alpha-L-fucosidase.
 
   
 0.600
BCHO_1286
Glycosyl transferase.
   
   0.557
BCHO_0305
Beta-galactosidase P1.
 
 
 0.506
BCHO_1014
Sialate O-acetylesterase.
 
  
 0.430
BCHO_0586
Glycosyl transferase.
       0.405
rsmI
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.403
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.