STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1306Polysaccharide export ABC transporter permease protein. (278 aa)    
Predicted Functional Partners:
BCHO_1307
Sugar ABC transporter.
 
 
 0.999
BCHO_1305
Galactofuranosyltransferase.
 
  
 0.836
BCHO_1311
Glycosyl transferase family 2.
 
  
 0.724
BCHO_0687
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.722
BCHO_1312
Glycosyltransferase.
  
  
 0.606
BCHO_1313
UDP-galactopyranose mutase.
  
  
 0.606
BCHO_0651
Glycosyl transferase family protein.
 
  
 0.509
BCHO_0683
Glycosyl transferase family protein.
 
  
 0.475
BCHO_0115
Serine-threonine protein kinase.
 
    0.474
BCHO_1309
Glycosyl transferase family 2 protein.
  
  
 0.460
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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