Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_1402ABC transporter ATP-binding protein. (285 aa)    
Predicted Functional Partners:
BCHO_1401
ABC transporter permease.
  
  
 0.905
BCHO_0812
ABC transporter ATP-binding protein.
  
     0.767
BCHO_1125
ABC transporter ATP-binding protein.
  
     0.652
BCHO_1169
ABC transporter ATP-binding protein.
  
     0.638
BCHO_1298
ABC transporter ATP-binding protein.
  
     0.598
BCHO_1138
ABC transporter ATP-binding protein.
 
     0.595
BCHO_0582
ABC transporter.
  
     0.579
BCHO_1220
ABC transporter.
  
   
 0.542
BCHO_0894
ABC transporter ATP-binding protein.
  
   
 0.500
BCHO_1227
ABC transporter ATP-binding protein.
  
     0.486
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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