Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BCHO_1500Carboxypeptidase C. (498 aa)    
Predicted Functional Partners:
BCHO_1501
Glutamate/gamma-aminobutyrate antiporter.
   
 
 0.620
BCHO_1091
Shikimate 5-dehydrogenase.
    
   0.426
BCHO_0299
Fibronectin-binding protein.
  
     0.413
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.412
BCHO_0265
Putative phosphatidylethanolamine-binding protein.
   
 
 0.407
BCHO_0749
Hypothetical protein.
  
     0.406
BCHO_1502
Aminopeptidase; Belongs to the peptidase C1 family.
  
    0.401
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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