BCHO_1682 protein (Bifidobacterium choerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BCHO_1682

ABC transporter permease. (284 aa)

Predicted Functional Partners:

BCHO_1681

0.997

BCHO_0022

0.984

BCHO_1684

0.981

BCHO_0009

0.979

BCHO_0011

0.942

BCHO_1272

0.930

BCHO_1270

0.928

BCHO_0526

0.766

BCHO_1261

0.766

BCHO_1680

0.754

Your Current Organism:

Bifidobacterium choerinum

NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BCHO_0009	BCHO_0011	Sugar ABC transporter permease.	Sugar ABC transporter substrate-binding protein.	0.995
BCHO_0009	BCHO_0022	Sugar ABC transporter permease.	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.976
BCHO_0009	BCHO_0526	Sugar ABC transporter permease.	ABC transporter substrate-binding protein.	0.593
BCHO_0009	BCHO_1261	Sugar ABC transporter permease.	ABC transporter substrate-binding protein.	0.593
BCHO_0009	BCHO_1270	Sugar ABC transporter permease.	Sugars ABC transporter substrate-binding protein.	0.808
BCHO_0009	BCHO_1272	Sugar ABC transporter permease.	ABC transporter permease.	0.921
BCHO_0009	BCHO_1681	Sugar ABC transporter permease.	Sugar ABC transporter permease.	0.919
BCHO_0009	BCHO_1682	Sugar ABC transporter permease.	ABC transporter permease.	0.979
BCHO_0009	BCHO_1684	Sugar ABC transporter permease.	ABC transporter substrate-binding protein.	0.941
BCHO_0011	BCHO_0009	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter permease.	0.995
BCHO_0011	BCHO_0022	Sugar ABC transporter substrate-binding protein.	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.929
BCHO_0011	BCHO_1270	Sugar ABC transporter substrate-binding protein.	Sugars ABC transporter substrate-binding protein.	0.913
BCHO_0011	BCHO_1272	Sugar ABC transporter substrate-binding protein.	ABC transporter permease.	0.925
BCHO_0011	BCHO_1681	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter permease.	0.937
BCHO_0011	BCHO_1682	Sugar ABC transporter substrate-binding protein.	ABC transporter permease.	0.942
BCHO_0011	BCHO_1684	Sugar ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.908
BCHO_0022	BCHO_0009	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease.	0.976
BCHO_0022	BCHO_0011	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein.	0.929
BCHO_0022	BCHO_0526	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein.	0.882
BCHO_0022	BCHO_1261	Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein.	0.882