Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BCHO_1682ABC transporter permease. (284 aa)    
Predicted Functional Partners:
BCHO_1681
Sugar ABC transporter permease.
 
 
 0.981
BCHO_0022
Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.930
BCHO_1684
ABC transporter substrate-binding protein.
 
   0.878
BCHO_0009
Sugar ABC transporter permease.
 
 
 0.873
BCHO_0526
ABC transporter substrate-binding protein.
  
 
 0.759
BCHO_1261
ABC transporter substrate-binding protein.
  
 
 0.759
BCHO_1680
Transferase.
 
    0.744
BCHO_0011
Sugar ABC transporter substrate-binding protein.
 
 
 0.660
BCHO_1244
Sugar ABC transporter permease.
  
 
 0.657
BCHO_0188
Sugar ABC transporter permease.
 
 
 0.648
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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