STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_05563HET domain-containing protein. (672 aa)    
Predicted Functional Partners:
CBER1_07528
Uncharacterized protein.
  
 
 0.902
CBER1_01263
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.896
CBER1_00371
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.892
CBER1_00678
Uncharacterized protein.
   
 
 0.892
CBER1_01595
Ribosomal_L18_c domain-containing protein.
   
 
 0.891
CBER1_10172
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.876
CBER1_10436
Uncharacterized protein.
   
 0.875
CBER1_03680
Uncharacterized protein.
  
   0.873
CBER1_06920
Ribosomal_L23eN domain-containing protein.
   
 
 0.871
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 
 0.867
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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