STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_08835APH domain-containing protein. (289 aa)    
Predicted Functional Partners:
CBER1_06699
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.673
CBER1_10238
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.646
CBER1_11573
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.646
CBER1_06433
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.646
CBER1_01784
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.
     
 0.622
CBER1_06591
Ubiquitin-like domain-containing protein.
     
 0.618
CBER1_08764
J domain-containing protein.
     
 0.599
CBER1_03776
J domain-containing protein.
     
 0.599
CBER1_11193
RING-type domain-containing protein.
    
 0.590
CBER1_02114
RING-type domain-containing protein.
    
 0.590
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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