STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_00921HTH La-type RNA-binding domain-containing protein. (1146 aa)    
Predicted Functional Partners:
CBER1_08541
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.774
CBER1_08692
Uncharacterized protein.
   
 
 0.679
CBER1_10724
PUA domain-containing protein.
   
 
 0.660
CBER1_02086
Uncharacterized protein.
   
 
 0.637
CBER1_11363
RRM domain-containing protein.
   
 
 0.576
CBER1_06849
Uncharacterized protein.
   
 
 0.543
CBER1_00573
Uncharacterized protein.
   
 
 0.543
CBER1_06677
MIF4G domain-containing protein.
   
 
 0.543
CBER1_10818
eIF_4G1 domain-containing protein.
   
 
 0.543
CBER1_02361
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.532
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
Server load: low (24%) [HD]