STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_00320Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
CBER1_01057
Uncharacterized protein.
    
 0.533
CBER1_01382
Uncharacterized protein.
    
  0.511
CBER1_07416
Uncharacterized protein.
    
  0.511
CBER1_09703
Uncharacterized protein.
    
  0.459
CBER1_05028
SUN domain-containing protein.
    
 0.433
CBER1_07063
SCA7 domain-containing protein.
    
 0.431
CBER1_08939
Uncharacterized protein.
    
 0.422
CBER1_04402
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.418
CBER1_02417
TFIID_20kDa domain-containing protein.
    
  0.413
CBER1_11303
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
  0.412
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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