STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_09496LsmAD domain-containing protein. (960 aa)    
Predicted Functional Partners:
CBER1_06586
AD domain-containing protein.
    
 0.997
CBER1_08541
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.954
CBER1_03722
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.950
CBER1_01746
Sm domain-containing protein.
    
 
 0.949
CBER1_08831
Uncharacterized protein.
    
 
 0.908
CBER1_03891
Uncharacterized protein.
    
 
 0.865
CBER1_03892
Uncharacterized protein.
    
 
 0.865
CBER1_01122
Sm domain-containing protein.
    
 
 0.862
CBER1_09605
Uncharacterized protein.
    
 
 0.671
CBER1_00804
Uncharacterized protein.
   
 
 0.657
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.