CBER1_02845 protein (Cercospora berteroae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBER1_02845

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

CBER1_01063

0.902

CBER1_09950

0.899

CBER1_02251

0.840

CBER1_00978

0.835

CBER1_00258

0.835

CBER1_04741

0.826

CBER1_10873

0.779

CBER1_00848

0.761

CBER1_01331

0.761

CBER1_11120

0.760

Your Current Organism:

Cercospora berteroae

NCBI taxonomy Id: 357750
Other names: C. berteroae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBER1_00258	CBER1_00848	A0A2S6CDF4	A0A2S6C1N0	Uncharacterized protein.	Uncharacterized protein.	0.414
CBER1_00258	CBER1_00978	A0A2S6CDF4	A0A2S6C0U0	Uncharacterized protein.	RIC1 domain-containing protein.	0.448
CBER1_00258	CBER1_01331	A0A2S6CDF4	A0A2S6CKN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.414
CBER1_00258	CBER1_02251	A0A2S6CDF4	A0A2S6CB62	Uncharacterized protein.	Uncharacterized protein.	0.657
CBER1_00258	CBER1_02845	A0A2S6CDF4	A0A2S6CBX6	Uncharacterized protein.	Uncharacterized protein.	0.835
CBER1_00258	CBER1_04741	A0A2S6CDF4	A0A2S6BR86	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.701
CBER1_00258	CBER1_09950	A0A2S6CDF4	A0A2S6CDV1	Uncharacterized protein.	Uncharacterized protein.	0.567
CBER1_00258	CBER1_10873	A0A2S6CDF4	A0A2S6BZ42	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.737
CBER1_00258	CBER1_11120	A0A2S6CDF4	A0A2S6BZ09	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.434
CBER1_00848	CBER1_00258	A0A2S6C1N0	A0A2S6CDF4	Uncharacterized protein.	Uncharacterized protein.	0.414
CBER1_00848	CBER1_00978	A0A2S6C1N0	A0A2S6C0U0	Uncharacterized protein.	RIC1 domain-containing protein.	0.421
CBER1_00848	CBER1_02251	A0A2S6C1N0	A0A2S6CB62	Uncharacterized protein.	Uncharacterized protein.	0.696
CBER1_00848	CBER1_02845	A0A2S6C1N0	A0A2S6CBX6	Uncharacterized protein.	Uncharacterized protein.	0.761
CBER1_00848	CBER1_04741	A0A2S6C1N0	A0A2S6BR86	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.519
CBER1_00848	CBER1_09950	A0A2S6C1N0	A0A2S6CDV1	Uncharacterized protein.	Uncharacterized protein.	0.540
CBER1_00848	CBER1_11120	A0A2S6C1N0	A0A2S6BZ09	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
CBER1_00978	CBER1_00258	A0A2S6C0U0	A0A2S6CDF4	RIC1 domain-containing protein.	Uncharacterized protein.	0.448
CBER1_00978	CBER1_00848	A0A2S6C0U0	A0A2S6C1N0	RIC1 domain-containing protein.	Uncharacterized protein.	0.421
CBER1_00978	CBER1_01063	A0A2S6C0U0	A0A2S6C384	RIC1 domain-containing protein.	DUF1713 domain-containing protein.	0.668
CBER1_00978	CBER1_01331	A0A2S6C0U0	A0A2S6CKN8	RIC1 domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.421