CBER1_05292 protein (Cercospora berteroae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBER1_05292

Uncharacterized protein. (366 aa)

Predicted Functional Partners:

CBER1_02992

0.863

CBER1_08961

0.806

CBER1_02613

0.806

CBER1_11859

0.806

CBER1_08129

0.722

CBER1_00290

0.722

CBER1_00825

0.722

CBER1_00848

0.650

CBER1_01331

0.650

CBER1_05950

0.633

Your Current Organism:

Cercospora berteroae

NCBI taxonomy Id: 357750
Other names: C. berteroae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBER1_00290	CBER1_00848	A0A2S6C1J6	A0A2S6C1N0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.710
CBER1_00290	CBER1_01331	A0A2S6C1J6	A0A2S6CKN8	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.710
CBER1_00290	CBER1_02992	A0A2S6C1J6	A0A2S6C2P9	TPR_REGION domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.932
CBER1_00290	CBER1_05292	A0A2S6C1J6	A0A2S6CED8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.722
CBER1_00825	CBER1_00848	A0A2S6C1P5	A0A2S6C1N0	Uncharacterized protein.	Uncharacterized protein.	0.710
CBER1_00825	CBER1_01331	A0A2S6C1P5	A0A2S6CKN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.710
CBER1_00825	CBER1_02992	A0A2S6C1P5	A0A2S6C2P9	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.932
CBER1_00825	CBER1_05292	A0A2S6C1P5	A0A2S6CED8	Uncharacterized protein.	Uncharacterized protein.	0.722
CBER1_00848	CBER1_00290	A0A2S6C1N0	A0A2S6C1J6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.710
CBER1_00848	CBER1_00825	A0A2S6C1N0	A0A2S6C1P5	Uncharacterized protein.	Uncharacterized protein.	0.710
CBER1_00848	CBER1_02992	A0A2S6C1N0	A0A2S6C2P9	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.954
CBER1_00848	CBER1_05292	A0A2S6C1N0	A0A2S6CED8	Uncharacterized protein.	Uncharacterized protein.	0.650
CBER1_00848	CBER1_08129	A0A2S6C1N0	A0A2S6BTD4	Uncharacterized protein.	UBA domain-containing protein.	0.998
CBER1_01331	CBER1_00290	A0A2S6CKN8	A0A2S6C1J6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	TPR_REGION domain-containing protein.	0.710
CBER1_01331	CBER1_00825	A0A2S6CKN8	A0A2S6C1P5	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.710
CBER1_01331	CBER1_02992	A0A2S6CKN8	A0A2S6C2P9	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.954
CBER1_01331	CBER1_05292	A0A2S6CKN8	A0A2S6CED8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.650
CBER1_01331	CBER1_08129	A0A2S6CKN8	A0A2S6BTD4	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	UBA domain-containing protein.	0.998
CBER1_02613	CBER1_05292	A0A2S6CEJ1	A0A2S6CED8	Uncharacterized protein.	Uncharacterized protein.	0.806
CBER1_02613	CBER1_05950	A0A2S6CEJ1	A0A2S6CAK7	Uncharacterized protein.	Pex14_N domain-containing protein.	0.987