CBER1_02676 protein (Cercospora berteroae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBER1_02676

Uncharacterized protein. (318 aa)

Predicted Functional Partners:

CBER1_09615

0.850

CBER1_08193

0.781

CBER1_00591

0.777

CBER1_10862

0.745

CBER1_00485

0.744

CBER1_01718

0.726

CBER1_07059

0.691

CBER1_00510

0.669

CBER1_03596

0.568

CBER1_04738

0.567

Your Current Organism:

Cercospora berteroae

NCBI taxonomy Id: 357750
Other names: C. berteroae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBER1_00485	CBER1_02676	A0A2S6CBK2	A0A2S6CJY2	DNA polymerase.	Uncharacterized protein.	0.744
CBER1_00485	CBER1_03596	A0A2S6CBK2	A0A2S6C8A2	DNA polymerase.	DNA polymerase.	0.844
CBER1_00485	CBER1_10862	A0A2S6CBK2	A0A2S6BYX0	DNA polymerase.	Uncharacterized protein.	0.999
CBER1_00510	CBER1_00591	A0A2S6CBG2	A0A2S6CB89	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Aamy domain-containing protein.	0.993
CBER1_00510	CBER1_01718	A0A2S6CBG2	A0A2S6CH80	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.990
CBER1_00510	CBER1_02676	A0A2S6CBG2	A0A2S6CJY2	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.669
CBER1_00510	CBER1_04738	A0A2S6CBG2	A0A2S6BR79	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.810
CBER1_00510	CBER1_07059	A0A2S6CBG2	A0A2S6C703	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	CBM21 domain-containing protein.	0.585
CBER1_00510	CBER1_08193	A0A2S6CBG2	A0A2S6BWA4	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.626
CBER1_00510	CBER1_09615	A0A2S6CBG2	A0A2S6BXD1	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.980
CBER1_00591	CBER1_00510	A0A2S6CB89	A0A2S6CBG2	Aamy domain-containing protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.993
CBER1_00591	CBER1_01718	A0A2S6CB89	A0A2S6CH80	Aamy domain-containing protein.	Uncharacterized protein.	0.966
CBER1_00591	CBER1_02676	A0A2S6CB89	A0A2S6CJY2	Aamy domain-containing protein.	Uncharacterized protein.	0.777
CBER1_00591	CBER1_04738	A0A2S6CB89	A0A2S6BR79	Aamy domain-containing protein.	Uncharacterized protein.	0.869
CBER1_00591	CBER1_08193	A0A2S6CB89	A0A2S6BWA4	Aamy domain-containing protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.572
CBER1_00591	CBER1_09615	A0A2S6CB89	A0A2S6BXD1	Aamy domain-containing protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.999
CBER1_01718	CBER1_00510	A0A2S6CH80	A0A2S6CBG2	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.990
CBER1_01718	CBER1_00591	A0A2S6CH80	A0A2S6CB89	Uncharacterized protein.	Aamy domain-containing protein.	0.966
CBER1_01718	CBER1_02676	A0A2S6CH80	A0A2S6CJY2	Uncharacterized protein.	Uncharacterized protein.	0.726
CBER1_01718	CBER1_04738	A0A2S6CH80	A0A2S6BR79	Uncharacterized protein.	Uncharacterized protein.	0.781