STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_02688Smr domain-containing protein. (546 aa)    
Predicted Functional Partners:
CBER1_11515
Uncharacterized protein.
   
   0.829
CBER1_01337
Uncharacterized protein.
   
   0.794
CBER1_10057
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
  0.701
CBER1_05547
Uncharacterized protein.
   
   0.643
CBER1_08622
Uncharacterized protein.
   
   0.639
CBER1_11555
zf-CHCC domain-containing protein.
   
   0.637
CBER1_01282
L51_S25_CI-B8 domain-containing protein.
   
   0.614
CBER1_05549
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
   0.613
CBER1_00054
Uncharacterized protein; Belongs to the complex I LYR family.
    
   0.609
CBER1_02146
Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.
   
   0.600
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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