STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_10729Fungal_trans domain-containing protein. (640 aa)    
Predicted Functional Partners:
CBER1_03882
Uncharacterized protein.
    
 0.808
CBER1_07269
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.802
CBER1_05511
DRIM domain-containing protein.
   
  0.592
CBER1_04843
Uncharacterized protein.
    
  0.562
CBER1_08544
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
    
  0.536
CBER1_08492
WD_REPEATS_REGION domain-containing protein.
    
  0.536
CBER1_00899
CBF domain-containing protein.
    
  0.536
CBER1_01117
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.536
CBER1_02497
Uncharacterized protein.
    
  0.536
CBER1_10533
PINc domain-containing protein.
    
  0.536
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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