STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBER1_03487Uncharacterized protein. (309 aa)    
Predicted Functional Partners:
CBER1_05125
Bms1-type G domain-containing protein.
   
  0.531
CBER1_03977
Uncharacterized protein.
   
  0.530
CBER1_05798
Uncharacterized protein.
   
 0.525
CBER1_06893
Uncharacterized protein.
   
  0.522
CBER1_06900
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  0.520
CBER1_05370
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.514
CBER1_09780
Uncharacterized protein.
   
  0.513
CBER1_10172
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.512
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.510
CBER1_01117
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.510
Your Current Organism:
Cercospora berteroae
NCBI taxonomy Id: 357750
Other names: C. berteroae
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