Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_0007KEGG: she:Shewmr4_0592 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Ping_0008
PFAM: UvrD/REP helicase; KEGG: cps:CPS_0080 DNA helicase II.
       0.458
argS
KEGG: sfr:Sfri_3762 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
       0.436
ftsN
Cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: pat:Patl_4190 sporulation related.
       0.434
Ping_0009
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VP2980 hypothetical protein.
       0.400
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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