STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ping_0047KEGG: bxe:Bxe_B0694 ABC taurine transporter, periplasmic ligand binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3. (335 aa)    
Predicted Functional Partners:
tauB
ABC transporter for nitrate/sulfonate/bicarbonate ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
 0.999
Ping_0049
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0692 ABC taurine transporter, inner membrane subunit.
 
 0.999
Ping_2376
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA0134 ABC transporter permease protein.
 
  
 0.810
Ping_0046
PFAM: regulatory protein GntR, HTH; KEGG: csa:Csal_0157 transcriptional regulator, GntR family.
 
   
 0.656
Ping_2377
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0135 putative ABC transporter, ATP-binding protein.
  
 0.580
Ping_0050
PFAM: protein of unknown function DUF81; KEGG: csa:Csal_0160 protein of unknown function DUF81.
 
     0.478
Ping_3695
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: tcx:Tcr_2079 phosphonate-binding periplasmic protein.
     
 0.412
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.