STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0109PFAM: electron transport protein SCO1/SenC; KEGG: pat:Patl_4237 electron transport protein SCO1/SenC. (212 aa)    
Predicted Functional Partners:
Ping_2717
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.942
Ping_2711
PFAM: cytochrome oxidase assembly; KEGG: pha:PSHAa2866 cytochrome oxidase assembly protein.
 
 0.865
Ping_2715
PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: pha:PSHAa2870 cytochrome c oxidase assembly protein CoxG.
 
 0.852
Ping_2293
PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein.
 
 
 0.845
Ping_3432
Periplasmic protein conserved in bacteria with c-terminal histidine; PFAM: protein of unknown function DUF461; KEGG: tcx:Tcr_1566 protein of unknown function DUF461.
 
   
 0.833
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit PetA; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
  
 0.656
Ping_3018
TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: vch:VC2051 thiol:disulfide interchange protein DsbE.
 
 
 0.652
Ping_2713
KEGG: pha:PSHAa2868 transmembrane cytochrome oxidase complex biogenesis factor.
  
 
 0.649
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.641
Ping_2872
PFAM: cytochrome c1; KEGG: vfi:VF2217 cytochrome C1.
 
  
 0.639
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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