STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0158TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM. (354 aa)    
Predicted Functional Partners:
Ping_0159
PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein.
 
 
 0.998
pilO
PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO.
 
 
 0.987
Ping_0162
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: sdn:Sden_0260 type II and III secretion system protein.
 
 
 0.986
pilP
Type IV pilus biogenesis protein PilP; PFAM: Pilus assembly protein, PilQ; KEGG: sfr:Sfri_0373 pilus assembly protein, PilQ.
 
 
 0.984
Ping_0077
PFAM: Peptidoglycan-binding LysM; KEGG: sfr:Sfri_0025 peptidoglycan-binding LysM.
  
 
   0.894
pilC
PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein.
 
 
 
 0.855
pilT
Pilus retraction ATPase PilT; KEGG: cps:CPS_3662 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.840
pilU
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili).
  
  
 0.807
Ping_0494
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: psb:Psyr_2906 pilus retraction protein PilT.
  
  
 0.801
Ping_0294
KEGG: tbd:Tbd_1865 pilus assembly protein.
 
   
 0.788
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.