Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_0162TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: sdn:Sden_0260 type II and III secretion system protein. (689 aa)    
Predicted Functional Partners:
Ping_0159
PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein.
 
 
 0.996
pilP
Type IV pilus biogenesis protein PilP; PFAM: Pilus assembly protein, PilQ; KEGG: sfr:Sfri_0373 pilus assembly protein, PilQ.
 
 
 0.996
Ping_0158
TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM.
 
 
 0.993
pilO
PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO.
 
 
 0.989
Ping_0077
PFAM: Peptidoglycan-binding LysM; KEGG: sfr:Sfri_0025 peptidoglycan-binding LysM.
 
 
 
 0.966
pilC
PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein.
 
 
 
 0.850
pilT
Pilus retraction ATPase PilT; KEGG: cps:CPS_3662 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.828
Ping_1166
Type IV pilus biogenesis/stability protein PilW; KEGG: ppr:PBPRA0761 hypothetical fimbrial biogenesis and twitching motility protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   
 0.819
Ping_3255
Hypothetical protein containing methylation site; KEGG: csa:Csal_0493 methylation.
 
   
 0.809
Ping_0294
KEGG: tbd:Tbd_1865 pilus assembly protein.
 
   
 0.801
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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