STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0197Potassium uptake protein, TrkH family protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (488 aa)    
Predicted Functional Partners:
Ping_0081
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: vfi:VF2546 Trk system potassium uptake protein TrkA.
 
 
 0.965
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
      0.878
Ping_1941
PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: dps:DP1262 similar to voltage-gated potassium channel.
  
 
 0.824
Ping_3339
PFAM: Ion transport 2 domain protein,; KEGG: pha:PSHAa0137 potassium channel protein.
  
 
 0.824
Ping_0196
Elongation factor; PFAM: protein of unknown function UPF0029; KEGG: plu:plu4400 hypothetical protein.
       0.788
Ping_0198
KEGG: yps:YPTB0271 protoporphyrinogen oxidase.
       0.788
Ping_0194
PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3788 glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
       0.554
Ping_0195
PFAM: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase.
       0.554
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
   0.523
Ping_0199
KEGG: vvy:VV3187 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
    0.486
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.