STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0256PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: par:Psyc_0421 possible chalcone synthase. (362 aa)    
Predicted Functional Partners:
Ping_0254
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: par:Psyc_0419 hypothetical protein.
 
    0.811
Ping_0255
PFAM: FAD dependent oxidoreductase; KEGG: par:Psyc_0420 hypothetical protein.
 
  
 0.806
Ping_0434
TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: net:Neut_0899 eight transmembrane protein EpsH.
    
 0.672
Ping_2586
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ppr:PBPRB1407 metallo-beta-lactamase family protein.
    
 0.649
Ping_2604
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bba:Bd1836 fatty oxidation complex, alpha subunit.
 
 
 0.553
pfaA
Polyunsaturated fatty acid synthase PfaA; PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: cps:CPS_3104 polyunsaturated fatty acid synthase PfaA.
  
 
 0.538
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.518
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.479
Ping_0998
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase.
    
   0.435
Ping_1548
Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); KEGG: pat:Patl_0152 deoxyribodipyrimidine photolyase; TIGRFAM: DNA photolyase, FAD- binding- domain protein; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein.
    
   0.435
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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