STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0290PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1809 putative peptide transport system permease protein. (358 aa)    
Predicted Functional Partners:
Ping_0289
PFAM: extracellular solute-binding protein, family 5; KEGG: pae:PA1810 putative peptide transport system substrate-binding protein.
  
 0.984
Ping_0291
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 putative peptide transport system permease protein.
  
 0.980
Ping_0292
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_4150 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.972
dppC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease).
     0.710
Ping_3157
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: noc:Noc_2773 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
     0.708
Ping_0564
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2516 dipeptide transport system permease protein DppC.
     0.703
Ping_0547
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0134 peptide ABC transporter, permease protein.
     0.687
sapC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA2443 putative peptide ABC transporter, permease protein.
  
   
 0.669
Ping_2421
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bja:blr3340 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
     0.656
Ping_3158
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0704 oligopeptide ABC transporter, permease protein.
     0.613
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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