STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0293PFAM: Lytic transglycosylase, catalytic; KEGG: ppr:PBPRA0641 hypothetical soluble lytic murein transglycosylase. (637 aa)    
Predicted Functional Partners:
Ping_0397
PFAM: permease YjgP/YjgQ family protein; KEGG: sgl:SG2107 putative transport protein.
  
     0.473
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.453
Ping_0289
PFAM: extracellular solute-binding protein, family 5; KEGG: pae:PA1810 putative peptide transport system substrate-binding protein.
       0.426
Ping_0290
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1809 putative peptide transport system permease protein.
       0.426
Ping_0291
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 putative peptide transport system permease protein.
       0.426
mltF
Lytic transglycosylase, catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella.
     
 0.425
Ping_0292
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_4150 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.424
Ping_0367
PFAM: Lytic transglycosylase, catalytic; KEGG: mca:MCA2008 transglycosylase SLT domain protein.
 
   
0.403
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.