STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0327PFAM: glycosyl transferase, family 9; KEGG: vch:VC0223 ADP-heptose--LPS heptosyltransferase II, putative. (339 aa)    
Predicted Functional Partners:
Ping_0334
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: pfo:Pfl_0465 lipopolysaccharide heptosyltransferase II.
 
  
 0.833
Ping_0328
PFAM: glycosyl transferase, family 2; KEGG: vch:VC0224 lipopolysaccharide biosynthesis glycosyltransferase, putative.
  
 0.804
Ping_0329
PFAM: glycosyl transferase, family 9; KEGG: vvu:VV10816 ADP-heptose:LPS heptosyltransferase.
  
   
 0.795
Ping_0326
PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: vch:VC0234 hypothetical protein.
 
     0.679
hldE
D-alpha,beta-D-heptose 7-phosphate 1-kinase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
 
   
 0.562
Ping_0325
Exopolysaccharide biosynthesis protein-like protein; KEGG: hin:HI1244 hypothetical protein.
       0.495
Ping_3647
PFAM: glycosyl transferase, family 9; KEGG: vfi:VFA1075 possible heptosyltransferase.
 
     0.462
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
   
 0.425
Ping_3285
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: sdn:Sden_1383 D,D-heptose 1,7-bisphosphate phosphatase.
 
   
 0.425
Ping_0553
Maltoporin; KEGG: vvy:VVA0142 maltoporin.
  
     0.420
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.