STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0417PFAM: Amidase; KEGG: mlo:mlr7070 glutamyl-tRNA(Gln) amidotransferase subunit A. (437 aa)    
Predicted Functional Partners:
Ping_3549
Urea amidolyase related protein; KEGG: vpa:VPA0875 putative carboxylase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2.
   
 0.918
Ping_2417
Allophanate hydrolase; PFAM: Amidase; KEGG: rpa:RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit A.
  
  
 
0.901
ureA
Urease, gamma subunit; KEGG: hch:HCH_04521 UreA amidohydrolase (urease) gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; Belongs to the urease gamma subunit family.
     
  0.900
ureB
KEGG: pen:PSEEN2095 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; Belongs to the urease beta subunit family.
     
  0.900
ureC
Urease, Metallo peptidase, MEROPS family M38; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: hch:HCH_04523 urease, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
  0.900
Ping_0419
KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family.
 
     0.875
Ping_2837
PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase.
 
  
 0.706
Ping_0418
PFAM: regulatory protein, LysR; KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family.
 
     0.686
Ping_0416
PFAM: Endoribonuclease L-PSP; KEGG: bja:blr4467 hypothetical protein.
       0.625
Ping_2418
PFAM: extracellular solute-binding protein, family 5; KEGG: rpa:RPA1473 possible peptide transport system substrate-binding protein.
  
     0.619
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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