STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0419KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family. (177 aa)    
Predicted Functional Partners:
Ping_0418
PFAM: regulatory protein, LysR; KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family.
     0.989
Ping_0417
PFAM: Amidase; KEGG: mlo:mlr7070 glutamyl-tRNA(Gln) amidotransferase subunit A.
 
     0.875
Ping_2418
PFAM: extracellular solute-binding protein, family 5; KEGG: rpa:RPA1473 possible peptide transport system substrate-binding protein.
  
     0.765
Ping_2417
Allophanate hydrolase; PFAM: Amidase; KEGG: rpa:RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit A.
  
     0.737
Ping_0416
PFAM: Endoribonuclease L-PSP; KEGG: bja:blr4467 hypothetical protein.
 
     0.520
Ping_2419
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4050 binding-protein-dependent transport systems inner membrane component.
  
     0.495
dppC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease).
  
     0.469
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.