STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0443PFAM: acyltransferase 3; KEGG: pat:Patl_1096 acyltransferase 3. (625 aa)    
Predicted Functional Partners:
Ping_0438
Transporter of NadC family protein; KEGG: mba:Mbar_B3744 hypothetical protein.
 
  
 0.547
Ping_0440
PFAM: glycosyl transferase, group 1; KEGG: pat:Patl_4007 glycosyl transferase, group 1.
  
  
 0.508
Ping_0442
PFAM: O-antigen polymerase.
       0.508
Ping_0441
KEGG: mac:MA1063 capsular polysaccharide biosynthesis protein.
       0.495
Ping_0439
Hypothetical protein.
       0.477
Ping_0436
N-acetylmannosaminyltransferase; KEGG: rru:Rru_A1484 glycosyl transferase WecB/TagA/CpsF; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
     
 0.414
Ping_0437
Hypothetical protein; KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein.
       0.405
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.