STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0450PFAM: FAD dependent oxidoreductase; KEGG: pub:SAR11_0547 D amino acid oxidase (DAO) family. (378 aa)    
Predicted Functional Partners:
Ping_0453
Hypothetical protein.
 
     0.953
Ping_0452
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB3239 probable D-tagatose 3-epimerase.
 
     0.952
Ping_0447
Dolichyl-phosphate beta-D-mannosyltransferase; KEGG: cgb:cg1672 polyprenol-phosphate-mannose synthase domain 1.
 
     0.910
Ping_0449
PFAM: glycosyl transferase, family 2; KEGG: mca:MCA2193 glycosyl transferase, group 2 family.
 
     0.886
Ping_0451
PFAM: small multidrug resistance protein; KEGG: dsy:DSY2566 hypothetical protein.
       0.800
Ping_0448
Hypothetical protein.
       0.791
Ping_0446
Hypothetical protein.
       0.588
Ping_2737
KEGG: cps:CPS_4661 hypothetical protein.
  
  
 0.467
Ping_1007
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ppr:PBPRA0542 putative glutamate synthase, large subunit.
  
  
 0.434
Ping_3315
PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: vch:VC2033 alcohol dehydrogenase/acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.409
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.