STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0483PFAM: EAL domain protein; response regulator receiver; KEGG: nmu:Nmul_A1555 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain). (406 aa)    
Predicted Functional Partners:
Ping_3077
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; KEGG: vfi:VFA0056 hypothetical protein.
  
 0.987
Ping_0484
Multi-sensor histidine kinase with CHASE and PAS/PAC sensory domains; KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.986
Ping_2550
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s).
 
 0.982
Ping_1306
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_A3335 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains).
   0.976
Ping_2916
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vpa:VPA0878 hypothetical protein.
   0.976
Ping_1205
Diguanylate cyclase with PAS/PAC sensor; KEGG: dar:Daro_2825 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 0.969
Ping_1699
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pfl:PFL_3308 diguanylate cyclase, putative.
  
 0.961
Ping_1121
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa0644 two-component response regulator with GGDEF domain.
   0.952
Ping_1821
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: lic:LIC11128 GGDEF family protein.
   0.935
Ping_2140
KEGG: pol:Bpro_2468 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.921
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.