STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0550KEGG: vvu:VV21296 hypothetical protein. (1179 aa)    
Predicted Functional Partners:
Ping_0556
KEGG: vvy:VVA0139 hypothetical protein.
 
     0.798
Ping_0551
KEGG: bth:BT2954 hypothetical protein.
       0.783
Ping_2110
PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: pat:Patl_2349 hypothetical protein.
  
     0.674
Ping_0549
ABC oligopeptide/dipeptide transporter ATP-binding protein; KEGG: vvy:VVA0136 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.565
Ping_0547
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0134 peptide ABC transporter, permease protein.
       0.564
Ping_0548
ABC oligopeptide/dipeptide transporter ATP-binding protein; KEGG: vvu:VV21294 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.564
Ping_0546
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0133 peptide ABC transporter, permease protein.
  
    0.559
Ping_0545
PFAM: extracellular solute-binding protein, family 5; KEGG: vvy:VVA0132 ABC-type dipeptide transport system, periplasmic component.
       0.443
Ping_0555
PFAM: Carbohydrate-binding, CenC domain protein domain protein; KEGG: cps:CPS_3716 glycosyl hydrolase, family 16.
  
   
 0.432
Ping_0500
Hypothetical protein; KEGG: pat:Patl_2143 glycoside hydrolase, family 13-like.
  
     0.427
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.