STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0553Maltoporin; KEGG: vvy:VVA0142 maltoporin. (450 aa)    
Predicted Functional Partners:
Ping_0560
Hypothetical protein; KEGG: yps:YPTB3641 maltose operon periplasmic protein.
  
  
 0.807
Ping_1474
PFAM: porin, Gram-negative type; KEGG: vvy:VV2720 outer membrane protein OmpU.
  
   
 0.705
Ping_3613
PFAM: porin, Gram-negative type; KEGG: vvu:VV20580 outer membrane protein.
  
   
 0.691
Ping_0690
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: ppr:PBPRB0642 hypothetical outer membrane protein OmpA; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
 0.525
tolB
TolB, N-terminal domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.524
Ping_3105
KEGG: ava:Ava_3495 Tn7-like transposition protein D.
  
     0.515
Ping_2955
PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: ppr:PBPRA0837 conserved hypothetical protein; Belongs to the UPF0255 family.
  
     0.511
Ping_2742
KEGG: vpa:VPA0241 hypothetical protein.
  
     0.507
Ping_2285
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB1907 putative signal transduction histidine kinase.
  
     0.500
Ping_3280
PFAM: fumarate reductase, subunit C; KEGG: cvi:CV3367 fumarate reductase, subunit C.
  
     0.469
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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