STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0554PFAM: glycoside hydrolase, family 16; KEGG: vvy:VVA0140 beta-glucanase. (532 aa)    
Predicted Functional Partners:
Ping_1621
PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase.
  
    0.588
Ping_2909
Transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator.
 
     0.560
Ping_0555
PFAM: Carbohydrate-binding, CenC domain protein domain protein; KEGG: cps:CPS_3716 glycosyl hydrolase, family 16.
   
 0.539
Ping_2529
PFAM: glycoside hydrolase, family 31; glycoside hydrolase, starch-binding; KEGG: ppr:PBPRB0321 hypothetical protein; Belongs to the glycosyl hydrolase 31 family.
  
     0.416
Ping_2107
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: vvu:VV21304 beta-glucosidase-related glycosidase; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.406
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.