STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0562PFAM: extracellular solute-binding protein, family 5; KEGG: vfi:VF2518 dipeptide-binding protein. (518 aa)    
Predicted Functional Partners:
Ping_0563
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2517 dipeptide transport system permease protein DppB.
 
 0.951
Ping_0564
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2516 dipeptide transport system permease protein DppC.
 
 0.935
Ping_0561
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0098 putative peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.782
Ping_2419
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4050 binding-protein-dependent transport systems inner membrane component.
 
 0.765
dppC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease).
 
 0.748
Ping_0547
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0134 peptide ABC transporter, permease protein.
 
 0.725
Ping_0546
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0133 peptide ABC transporter, permease protein.
 
 
 0.658
Ping_0548
ABC oligopeptide/dipeptide transporter ATP-binding protein; KEGG: vvu:VV21294 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.657
Ping_0549
ABC oligopeptide/dipeptide transporter ATP-binding protein; KEGG: vvy:VVA0136 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.646
Ping_3158
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0704 oligopeptide ABC transporter, permease protein.
 
 
 0.637
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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