STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dctQ-5PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vvy:VV1578 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Ping_0648
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1580 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.957
dctQ-3
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_0678 TRAP dicarboxylate transporter, DctQ subunit, putative.
  
  
  0.942
Ping_0646
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VV1577 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.938
Ping_2934
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_03541 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.932
Ping_3545
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.928
Ping_3674
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_1477 hypothetical protein.
  
  
  0.918
Ping_2034
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_4915 C4-dicarboxylate transporter family protein, DctQ subunit.
  
  
  0.912
dctQ-4
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ppr:PBPRB1878 putative small integral C4-dicarboxylate membrane transport protein.
     
  0.900
dctQ-2
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ.
     
  0.900
dctQ-1
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ.
     
  0.900
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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