STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0680KEGG: ppr:PBPRA0701 putative type IV pilus assembly protein PilW. (201 aa)    
Predicted Functional Partners:
Ping_0103
TIGRFAM: general secretion pathway protein J; KEGG: ppr:PBPRA3475 putative Type II secretory pathway, component EpsJ.
  
 
 0.817
Ping_0104
PFAM: General secretion pathway protein K; KEGG: vch:VC2726 general secretion pathway protein K.
  
 
 0.807
Ping_0679
KEGG: vch:VC0858 type IV pilin, putative.
  
  
 0.783
Ping_0899
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pat:Patl_1779 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.600
rtxA
Structural toxin protein RtxA; KEGG: sde:Sde_1197 hypothetical protein.
       0.581
Ping_0098
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.568
Ping_0480
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: she:Shewmr4_0420 type IV-A pilus assembly ATPase PilB.
  
 
 0.568
Ping_0099
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: shm:Shewmr7_0153 general secretion pathway protein F.
  
  
 0.544
pilC
PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein.
  
  
 0.544
Ping_1737
KEGG: pat:Patl_2035 putative cytochrome c oxidase, subunit I.
  
     0.525
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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