STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0686PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein. (390 aa)    
Predicted Functional Partners:
tdk
PFAM: thymidine kinase; KEGG: son:SO3140 thymidine kinase.
       0.570
Ping_1886
KEGG: pha:PSHAa1013 hypothetical protein.
  
     0.530
Ping_1534
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mma:MM3105 putative cytosine deaminase.
 
     0.523
Ping_2104
PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV.
 
     0.474
Ping_1811
S-adenosylmethionine-dependent methyltransferase; KEGG: vfi:VFA0955 hypothetical protein.
  
     0.430
Ping_1289
KEGG: cps:CPS_0276 hypothetical protein.
  
     0.421
modF
ABC transporter for molybdenum ATP-binding protein ModF; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1777 putative molybdenum ABC transporter, ATP-binding protein ModF.
 
     0.408
Ping_2718
KEGG: cps:CPS_1415 hypothetical protein.
  
     0.407
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.