STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0689Sterol desaturase-like protein; KEGG: ccr:CC0203 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Ping_3007
KEGG: vfi:VF2151 iron(III)-binding protein.
      0.631
Ping_0688
Imelysin, Metallo peptidase, MEROPS family M75; KEGG: hch:HCH_00183 uncharacterized iron-regulated protein.
       0.586
Ping_0687
PFAM: protein of unknown function DUF1111; KEGG: hch:HCH_00182 predicted thiol oxidoreductase.
 
     0.566
Ping_2520
Hypothetical protein.
   
 
 0.467
ubiF
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vpa:VP0735 VisC-related protein.
   
 
 0.446
ubiH
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pha:PSHAa0563 2-octaprenyl-6-methoxyphenol hydroxylase.
   
 
 0.446
Ping_0608
KEGG: pat:Patl_3501 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
   
 
 0.446
Ping_0609
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: ppr:PBPRA3117 hypothetical protein.
   
 
 0.446
Ping_0849
PFAM: monooxygenase, FAD-binding; KEGG: cps:CPS_3257 monooxygenase family protein.
   
 
 0.446
Ping_2246
KEGG: vfi:VFA0558 coproporphyrinogen III oxidase.
  
  
 0.421
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.