STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0710TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vpa:VP0912 C4-dicarboxylate transport protein. (457 aa)    
Predicted Functional Partners:
dctQ-1
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ.
 
 
 0.961
Ping_0708
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VP0910 C4-dicarboxylate-binding periplasmic protein.
    0.893
dctQ-2
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ.
 
 
 0.837
Ping_0540
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1096 TRAP-type C4-dicarboxylate transport system, periplasmic component.
    0.793
Ping_0135
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VPA1702 putative dicarboxylate-binding periplasmic protein.
 
    0.770
dctQ-4
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ppr:PBPRB1878 putative small integral C4-dicarboxylate membrane transport protein.
 
 
 0.725
Ping_2035
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_4916 putative C4-dicarboxylate-binding periplasmic protein DctP.
 
    0.712
Ping_0570
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC1273 extracellular solute-binding protein, family 7.
 
    0.459
sfsA
PFAM: sugar fermentation stimulation protein; KEGG: vpa:VP2499 sugar fermentation stimulation protein; Belongs to the SfsA family.
       0.432
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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