STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0763PFAM: polysaccharide export protein; KEGG: vpa:VP0220 OtnA protein. (852 aa)    
Predicted Functional Partners:
Ping_0428
PFAM: polysaccharide export protein; KEGG: sde:Sde_0132 putative polysaccharide export protein, outer membrane.
  
  
 
0.908
Ping_0461
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase.
  
  
 0.896
Ping_0764
PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein.
 
     0.874
Ping_3460
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_3159 polysaccharide ABC transporter, ATP-binding protein.
  
  
 0.729
Ping_0766
KEGG: pat:Patl_1792 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.707
Ping_3457
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; sugar transferase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pen:PSEEN1504 UDP-glucose 4-epimerase.
  
  
 0.682
Ping_3461
PFAM: ABC-2 type transporter; KEGG: pfl:PFL_5495 ABC-2 type transporte.
  
  
 0.660
Ping_1794
PFAM: glycosyl transferase, group 1; KEGG: cps:CPS_0439 hypothetical protein.
  
  
 0.615
Ping_0762
KEGG: sdn:Sden_0209 hypothetical protein.
  
  
 0.589
Ping_0427
KEGG: sde:Sde_0133 uncharacterized protein involved in exopolysaccharide biosynthesis-like.
  
 
 0.528
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.