STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0764PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein. (307 aa)    
Predicted Functional Partners:
Ping_0763
PFAM: polysaccharide export protein; KEGG: vpa:VP0220 OtnA protein.
 
     0.874
Ping_0302
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family.
  
     0.686
Ping_2718
KEGG: cps:CPS_1415 hypothetical protein.
  
     0.663
Ping_0430
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: vch:VC0918 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.658
Ping_1445
KEGG: pat:Patl_3913 hypothetical protein.
  
     0.525
priB
Restart primosome assembly protein PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.495
Ping_0859
KEGG: sde:Sde_0395 hypothetical protein.
  
     0.481
Ping_0765
PFAM: NUDIX hydrolase; KEGG: ecp:ECP_2091 GDP-mannose mannosyl hydrolase.
       0.461
Ping_0766
KEGG: pat:Patl_1792 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
       0.447
Ping_2111
Transcriptional regulator, Fis family protein; KEGG: cps:CPS_4482 Bax domain protein.
  
     0.445
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.