STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0822PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03928 putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (299 aa)    
Predicted Functional Partners:
Ping_0821
PFAM: protein of unknown function DUF534; KEGG: bmb:BruAb1_2028 ABC transporter, periplasmic substrate-binding protein, hypothetical.
    0.997
Ping_0823
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1738 probable ATP-binding ABC transporter protein.
    0.997
Ping_0037
KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component.
 
    0.792
Ping_3330
KEGG: hch:HCH_03645 ABC-type uncharacterized transport system, periplasmic component.
 
    0.750
Ping_3331
KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component.
 
    0.684
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
       0.481
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.