STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0829PFAM: CreA family protein; KEGG: ppr:PBPRB0517 putative CreA protein. (164 aa)    
Predicted Functional Partners:
Ping_0833
KEGG: sdn:Sden_1544 hypothetical protein.
 
     0.780
Ping_0830
KEGG: vch:VC0904 hypothetical protein.
       0.768
Ping_0831
KEGG: cps:CPS_3531 hypothetical protein.
       0.768
Ping_0832
KEGG: vfi:VF0610 hypothetical protein.
       0.756
Ping_3246
KEGG: ppr:PBPRB0433 hypothetical protein.
  
     0.526
Ping_0834
PFAM: protein of unknown function DUF446; KEGG: ilo:IL0850 hypothetical protein.
       0.461
Ping_1044
KEGG: pha:PSHAa0504 hypothetical protein.
  
    0.432
Ping_2362
PFAM: protein of unknown function DUF1315; KEGG: ilo:IL1270 hypothetical protein.
  
     0.431
rraB
Hypothetical protein DUF1260; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.411
Ping_0106
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.410
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.