STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0856PFAM: protein of unknown function UPF0153; KEGG: pha:PSHAb0120 hypothetical protein. (97 aa)    
Predicted Functional Partners:
Ping_2237
PFAM: protein of unknown function RIO1; KEGG: ppr:PBPRA1235 putative RIO1/ZK632.3/MJ0444 family protein.
  
     0.567
ilvY
Transcriptional regulator IlvY, substrate-binding, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_3416 LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.566
Ping_2351
PFAM: protein kinase; leucine-rich repeat protein; SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: ppr:PBPRA2167 hypothetical protein.
  
     0.521
flgD
Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.512
Ping_0849
PFAM: monooxygenase, FAD-binding; KEGG: cps:CPS_3257 monooxygenase family protein.
  
     0.511
Ping_0857
KEGG: vpa:VPA0923 hypothetical protein.
       0.466
Ping_0063
PFAM: protein of unknown function DUF339; KEGG: cps:CPS_4131 TPR repeat protein.
  
     0.426
Ping_1763
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein.
  
    0.425
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.