STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0857KEGG: vpa:VPA0923 hypothetical protein. (94 aa)    
Predicted Functional Partners:
Ping_2933
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_03539 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
  
     0.523
Ping_0856
PFAM: protein of unknown function UPF0153; KEGG: pha:PSHAb0120 hypothetical protein.
       0.466
Ping_2934
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_03541 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.429
Ping_3545
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.426
Ping_2840
PFAM: regulatory protein, LysR; KEGG: vvy:VVA1564 transcriptional regulator.
  
     0.417
Ping_2335
KEGG: son:SO2181 hypothetical protein.
  
     0.400
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.